Publications

@article{Yu_2016,

title = {Multiscale implementation of infinite-swap replica exchange molecular dynamics},

author = {Tang-Qing Yu and Jianfeng Lu and Cameron F. Abrams and Eric Vanden-Eijnden},

url = {https://doi.org/10.1073%2Fpnas.1605089113},

doi = {10.1073/pnas.1605089113},

year  = {2016},

date = {2016-10-01},

journal = {Proceedings of the National Academy of Sciences},

volume = {113},

number = {42},

pages = {11744--11749},

publisher = {Proceedings of the National Academy of Sciences},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Moraca_2016,

title = {Computational Evaluation of HIV-1 gp120 Conformations of Soluble Trimeric gp140 Structures as Targets for de Novo Docking of First- and Second-Generation Small-Molecule CD4 Mimics},

author = {Francesca Moraca and Kriti Acharya and Bruno Melillo and Amos B. Smith and Irwin Chaiken and Cameron F. Abrams},

url = {https://doi.org/10.1021%2Facs.jcim.6b00393},

doi = {10.1021/acs.jcim.6b00393},

year  = {2016},

date = {2016-09-01},

journal = {Journal of Chemical Information and Modeling},

volume = {56},

number = {10},

pages = {2069--2079},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gardner_2016,

title = {Effect of intrinsic curvature and edge tension on the stability of binary mixed-membrane three-junctions},

author = {Jasmine M. Gardner and Markus Deserno and Cameron F. Abrams},

url = {https://doi.org/10.1063%2F1.4960433},

doi = {10.1063/1.4960433},

year  = {2016},

date = {2016-08-01},

journal = {The Journal of Chemical Physics},

volume = {145},

number = {7},

pages = {074901},

publisher = {AIP Publishing},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jang_2016,

title = {Thermal and mechanical properties of thermosetting polymers using coarse-grained simulation},

author = {C. Jang and C. F. Abrams},

url = {https://doi.org/10.1140%2Fepjst%2Fe2016-60143-0},

doi = {10.1140/epjst/e2016-60143-0},

year  = {2016},

date = {2016-07-01},

journal = {The European Physical Journal Special Topics},

volume = {225},

number = {8-9},

pages = {1775--1783},

publisher = {Springer Science and Business Media LLC},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gordon_2016,

title = {Aggregation of 12-Hydroxystearic Acid and Its Lithium Salt in Hexane: Molecular Dynamics Simulations},

author = {Ryan Gordon and Spencer T. Stober and Cameron F. Abrams},

url = {https://doi.org/10.1021%2Facs.jpcb.6b04193},

doi = {10.1021/acs.jpcb.6b04193},

year  = {2016},

date = {2016-07-01},

journal = {The Journal of Physical Chemistry B},

volume = {120},

number = {29},

pages = {7164--7173},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Bucci_2016,

title = {Kinetics of O_{2} Entry and Exit in Monomeric Sarcosine Oxidase via Markovian Milestoning Molecular Dynamics},

author = {Anthony Bucci and Tang-Qing Yu and Eric Vanden-Eijnden and Cameron F. Abrams},

url = {https://doi.org/10.1021%2Facs.jctc.6b00071},

doi = {10.1021/acs.jctc.6b00071},

year  = {2016},

date = {2016-05-01},

journal = {Journal of Chemical Theory and Computation},

volume = {12},

number = {6},

pages = {2964--2972},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jang_2016b,

title = {Toughness enhancement of thermosetting polymers using a novel partially reacted substructure curing protocol: A combined molecular simulation and experimental study},

author = {Changwoon Jang and Majid Sharifi and Giuseppe R. Palmese and Cameron F. Abrams},

url = {https://doi.org/10.1016%2Fj.polymer.2016.03.023},

doi = {10.1016/j.polymer.2016.03.023},

year  = {2016},

date = {2016-05-01},

journal = {Polymer},

volume = {90},

pages = {249--255},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kalyana_Sundaram_2016,

title = {Impact of HIV-1 Membrane Cholesterol on Cell-Independent Lytic Inactivation and Cellular Infectivity},

author = {Ramalingam Venkat Kalyana Sundaram and Huiyuan Li and Lauren Bailey and Adel A. Rashad and Rachna Aneja and Karl Weiss and James Huynh and Arangaserry Rosemary Bastian and Elisabeth Papazoglou and Cameron Abrams and Steven Wrenn and Irwin Chaiken},

url = {https://doi.org/10.1021%2Facs.biochem.5b00936},

doi = {10.1021/acs.biochem.5b00936},

year  = {2016},

date = {2016-01-01},

journal = {Biochemistry},

volume = {55},

number = {3},

pages = {447--458},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Sharifi_2015,

title = {Epoxy Polymer Networks with Improved Thermal and Mechanical Properties via Controlled Dispersion of Reactive Toughening Agents},

author = {Majid Sharifi and Changwoon Jang and Cameron F. Abrams and Giuseppe R. Palmese},

url = {https://doi.org/10.1021%2Facs.macromol.5b00677},

doi = {10.1021/acs.macromol.5b00677},

year  = {2015},

date = {2015-10-01},

journal = {Macromolecules},

volume = {48},

number = {20},

pages = {7495--7502},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Paz_2015,

title = {Free Energy and Hidden Barriers of the β-Sheet Structure of Prion Protein},

author = {S. Alexis Paz and Cameron F. Abrams},

url = {https://doi.org/10.1021%2Facs.jctc.5b00576},

doi = {10.1021/acs.jctc.5b00576},

year  = {2015},

date = {2015-09-01},

urldate = {2015-09-01},

journal = {Journal of Chemical Theory and Computation},

volume = {11},

number = {10},

pages = {5024--5034},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Yu_2015,

title = {Full Kinetics of CO Entry, Internal Diffusion, and Exit in Myoglobin from Transition-Path Theory Simulations},

author = {Tang-Qing Yu and Mauro Lapelosa and Eric Vanden-Eijnden and Cameron F. Abrams},

url = {https://doi.org/10.1021%2Fja512484q},

doi = {10.1021/ja512484q},

year  = {2015},

date = {2015-02-01},

journal = {Journal of the American Chemical Society},

volume = {137},

number = {8},

pages = {3041--3050},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jang_2015,

title = {Comparison of Crosslinking Algorithms in Molecular Dynamics Simulation of Thermosetting Polymers},

author = {Changwoon Jang and Timothy W. Sirk and Jan W. Andzelm and Cameron F. Abrams},

url = {https://doi.org/10.1002%2Fmats.201400094},

doi = {10.1002/mats.201400094},

year  = {2015},

date = {2015-01-01},

journal = {Macromolecular Theory and Simulations},

volume = {24},

number = {3},

pages = {260--270},

publisher = {Wiley},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Rosemary_Bastian_2014,

title = {Mechanism of Multivalent Nanoparticle Encounter with HIV-1 for Potency Enhancement of Peptide Triazole Virus Inactivation},

author = {Arangassery Rosemary Bastian and Aakansha Nangarlia and Lauren D. Bailey and Andrew Holmes and R. Venkat Kalyana Sundaram and Charles Ang and Diogo R. M. Moreira and Kevin Freedman and Caitlin Duffy and Mark Contarino and Cameron Abrams and Michael Root and Irwin Chaiken},

url = {https://doi.org/10.1074%2Fjbc.m114.608315},

doi = {10.1074/jbc.m114.608315},

year  = {2014},

date = {2014-11-01},

journal = {Journal of Biological Chemistry},

volume = {290},

number = {1},

pages = {529--543},

publisher = {American Society for Biochemistry & Molecular Biology (ASBMB)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Baker_2014b,

title = {Dynamics of Lipids, Cholesterol, and Transmembrane α-Helices from Microsecond Molecular Dynamics Simulations},

author = {Michelle K. Baker and Cameron F. Abrams},

url = {https://doi.org/10.1021%2Fjp507027t},

doi = {10.1021/jp507027t},

year  = {2014},

date = {2014-11-01},

urldate = {2014-11-01},

journal = {The Journal of Physical Chemistry B},

volume = {118},

number = {47},

pages = {13590--13600},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jang_2014,

title = {Crosslink network rearrangement via reactive encapsulation of solvent in epoxy curing: A combined molecular simulation and experimental study},

author = {Changwoon Jang and Majid Sharifi and Giuseppe R. Palmese and Cameron F. Abrams},

url = {https://doi.org/10.1016%2Fj.polymer.2014.06.022},

doi = {10.1016/j.polymer.2014.06.022},

year  = {2014},

date = {2014-08-01},

journal = {Polymer},

volume = {55},

number = {16},

pages = {3859--3868},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Emileh_2014,

title = {Covalent Conjugation of a Peptide Triazole to HIV-1 gp120 Enables Intramolecular Binding Site Occupancy},

author = {Ali Emileh and Caitlin Duffy and Andrew P. Holmes and Arangassery Rosemary Bastian and Rachna Aneja and Ferit Tuzer and Srivats Rajagopal and Huiyuan Li and Cameron F. Abrams and Irwin M. Chaiken},

url = {https://doi.org/10.1021%2Fbi500136f},

doi = {10.1021/bi500136f},

year  = {2014},

date = {2014-05-01},

journal = {Biochemistry},

volume = {53},

number = {21},

pages = {3403--3414},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Baker_2014,

title = {Characterization of the water defect at the HIV-1 gp41 membrane spanning domain in bilayers with and without cholesterol using molecular simulations},

author = {Michelle K. Baker and Vamshi K. Gangupomu and Cameron F. Abrams},

url = {https://doi.org/10.1016%2Fj.bbamem.2014.01.009},

doi = {10.1016/j.bbamem.2014.01.009},

year  = {2014},

date = {2014-05-01},

journal = {Biochimica et Biophysica Acta (BBA) - Biomembranes},

volume = {1838},

number = {5},

pages = {1396--1405},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Bucci_2014,

title = {Oxygen Pathways and Allostery in Monomeric Sarcosine Oxidase via Single-Sweep Free-Energy Reconstruction},

author = {Anthony Bucci and Cameron F. Abrams},

url = {https://doi.org/10.1021%2Fct500088z},

doi = {10.1021/ct500088z},

year  = {2014},

date = {2014-04-01},

journal = {Journal of Chemical Theory and Computation},

volume = {10},

number = {7},

pages = {2668--2676},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Sharifi_2014,

title = {Toughened epoxy polymers via rearrangement of network topology},

author = {M. Sharifi and C. W. Jang and C. F. Abrams and G. R. Palmese},

url = {https://doi.org/10.1039%2Fc4ta03051f},

doi = {10.1039/c4ta03051f},

year  = {2014},

date = {2014-01-01},

journal = {Journal of Materials Chemistry A},

volume = {2},

number = {38},

pages = {16071--16082},

publisher = {Royal Society of Chemistry (RSC)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Abrams_2013,

title = {Enhanced Sampling in Molecular Dynamics Using Metadynamics, Replica-Exchange, and Temperature-Acceleration},

author = {Cameron Abrams and Giovanni Bussi},

url = {https://doi.org/10.3390%2Fe16010163},

doi = {10.3390/e16010163},

year  = {2013},

date = {2013-12-01},

journal = {Entropy},

volume = {16},

number = {1},

pages = {163--199},

publisher = {MDPI AG},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Lapelosa_2013,

title = {Transition-path theory calculations on non-uniform meshes in two and three dimensions using finite elements},

author = {Mauro Lapelosa and Cameron F. Abrams},

url = {https://doi.org/10.1016%2Fj.cpc.2013.05.017},

doi = {10.1016/j.cpc.2013.05.017},

year  = {2013},

date = {2013-10-01},

journal = {Computer Physics Communications},

volume = {184},

number = {10},

pages = {2310--2315},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Contarino_2013,

title = {Chimeric Cyanovirin-MPER Recombinantly Engineered Proteins Cause Cell-Free Virolysis of HIV-1},

author = {Mark Contarino and Arangassery R. Bastian and Ramalingam Venkat Kalyana Sundaram and Karyn McFadden and Caitlin Duffy and Vamshi Gangupomu and Michelle Baker and Cameron Abrams and Irwin Chaiken},

url = {https://doi.org/10.1128%2Faac.00309-13},

doi = {10.1128/aac.00309-13},

year  = {2013},

date = {2013-07-01},

journal = {Antimicrobial Agents and Chemotherapy},

volume = {57},

number = {10},

pages = {4743--4750},

publisher = {American Society for Microbiology},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Emileh_2013,

title = {A Model of Peptide Triazole Entry Inhibitor Binding to HIV-1 gp120 and the Mechanism of Bridging Sheet Disruption},

author = {Ali Emileh and Ferit Tuzer and Herman Yeh and Muddegowda Umashankara and Diogo R. M. Moreira and Judith M. LaLonde and Carole A. Bewley and Cameron F. Abrams and Irwin M. Chaiken},

url = {https://doi.org/10.1021%2Fbi400166b},

doi = {10.1021/bi400166b},

year  = {2013},

date = {2013-03-01},

journal = {Biochemistry},

volume = {52},

number = {13},

pages = {2245--2261},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Vashisth_2013,

title = {All-atom structural models of insulin binding to the insulin receptor in the presence of a tandem hormone-binding element},

author = {Harish Vashisth and Cameron F. Abrams},

url = {https://doi.org/10.1002%2Fprot.24255},

doi = {10.1002/prot.24255},

year  = {2013},

date = {2013-02-01},

journal = {Proteins: Structure, Function, and Bioinformatics},

volume = {81},

number = {6},

pages = {1017--1030},

publisher = {Wiley},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Lapelosa_2013b,

title = {A Computational Study of Water and CO Migration Sites and Channels Inside Myoglobin},

author = {Mauro Lapelosa and Cameron F. Abrams},

url = {https://doi.org/10.1021%2Fct300862j},

doi = {10.1021/ct300862j},

year  = {2013},

date = {2013-01-01},

journal = {Journal of Chemical Theory and Computation},

volume = {9},

number = {2},

pages = {1265--1271},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Abrams_2012,

title = {On-the-fly free energy parameterization via temperature accelerated molecular dynamics},

author = {Cameron F. Abrams and Eric Vanden-Eijnden},

url = {https://doi.org/10.1016%2Fj.cplett.2012.07.064},

doi = {10.1016/j.cplett.2012.07.064},

year  = {2012},

date = {2012-09-01},

journal = {Chemical Physics Letters},

volume = {547},

pages = {114--119},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Stober_2012,

title = {Energetics and Mechanism of the Normal-to-Amyloidogenic Isomerization of β2-Microglobulin: On-the-Fly String Method Calculations},

author = {Spencer T. Stober and Cameron F. Abrams},

url = {https://doi.org/10.1021%2Fjp304805v},

doi = {10.1021/jp304805v},

year  = {2012},

date = {2012-07-01},

urldate = {2012-07-01},

journal = {The Journal of Physical Chemistry B},

volume = {116},

number = {31},

pages = {9371--9375},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Zhang_2012,

title = {Structural Basis for Calmodulin as a Dynamic Calcium Sensor},

author = {Miao Zhang and Cameron Abrams and Liping Wang and Anthony Gizzi and Liping He and Ruihe Lin and Yuan Chen and Patrick J. Loll and John M. Pascal and Ji-fang Zhang},

url = {https://doi.org/10.1016%2Fj.str.2012.03.019},

doi = {10.1016/j.str.2012.03.019},

year  = {2012},

date = {2012-05-01},

journal = {Structure},

volume = {20},

number = {5},

pages = {911--923},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Vashisth_2012,

title = {DFG-Flip in the Insulin Receptor Kinase Is Facilitated by a Helical Intermediate State of the Activation Loop},

author = {Harish Vashisth and Luca Maragliano and Cameron F. Abrams},

url = {https://doi.org/10.1016%2Fj.bpj.2012.03.031},

doi = {10.1016/j.bpj.2012.03.031},

year  = {2012},

date = {2012-04-01},

journal = {Biophysical Journal},

volume = {102},

number = {8},

pages = {1979--1987},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Stober_2012b,

title = {Enhanced meta-analysis of acetylcholine binding protein structures reveals conformational signatures of agonism in nicotinic receptors},

author = {Spencer T. Stober and Cameron F. Abrams},

url = {https://doi.org/10.1002%2Fpro.2016},

doi = {10.1002/pro.2016},

year  = {2012},

date = {2012-01-01},

journal = {Protein Science},

volume = {21},

number = {3},

pages = {307--317},

publisher = {Wiley},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Emileh_2011,

title = {A mechanism by which binding of the broadly neutralizing antibody b12 unfolds the inner domain α1 helix in an engineered HIV-1 gp120},

author = {Ali Emileh and Cameron F. Abrams},

url = {https://doi.org/10.1002%2Fprot.22901},

doi = {10.1002/prot.22901},

year  = {2011},

date = {2011-11-01},

urldate = {2011-11-01},

journal = {Proteins: Structure, Function, and Bioinformatics},

volume = {79},

number = {2},

pages = {537--546},

publisher = {Wiley},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gangupomu_2010,

title = {All-Atom Models of the Membrane-Spanning Domain of HIV-1 gp41 from Metadynamics},

author = {Vamshi K. Gangupomu and Cameron F. Abrams},

url = {https://doi.org/10.1016%2Fj.bpj.2010.09.054},

doi = {10.1016/j.bpj.2010.09.054},

year  = {2010},

date = {2010-11-01},

urldate = {2010-11-01},

journal = {Biophysical Journal},

volume = {99},

number = {10},

pages = {3438--3444},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Vashisth_2010,

title = {All-Atom Structural Models for Complexes of Insulin-Like Growth Factors IGF1 and IGF2 with Their Cognate Receptor},

author = {Harish Vashisth and Cameron F. Abrams},

url = {https://doi.org/10.1016%2Fj.jmb.2010.05.025},

doi = {10.1016/j.jmb.2010.05.025},

year  = {2010},

date = {2010-07-01},

journal = {Journal of Molecular Biology},

volume = {400},

number = {3},

pages = {645--658},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Nyce_2010,

title = {Mapping Spatial Relationships between Residues in the Ligand-Binding Domain of the 5-HT_{3} Receptor Using a Molecular Ruler},

author = {Heather L. Nyce and Spencer T. Stober and Cameron F. Abrams and Michael M. White},

url = {https://doi.org/10.1016%2Fj.bpj.2010.01.034},

doi = {10.1016/j.bpj.2010.01.034},

year  = {2010},

date = {2010-05-01},

journal = {Biophysical Journal},

volume = {98},

number = {9},

pages = {1847--1855},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mukherji_2010,

title = {Slip-stick fracture and toughness enhancement in thermoset/thermoplastic polymer alloys under shear},

author = {Debashish Mukherji and Cameron F. Abrams},

url = {https://doi.org/10.1209%2F0295-5075%2F90%2F26003},

doi = {10.1209/0295-5075/90/26003},

year  = {2010},

date = {2010-04-01},

journal = {EPL (Europhysics Letters)},

volume = {90},

number = {2},

pages = {26003},

publisher = {IOP Publishing},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Abrams_2010,

title = {Large-scale conformational sampling of proteins using temperature-accelerated molecular dynamics},

author = {C. F. Abrams and E. Vanden-Eijnden},

url = {https://doi.org/10.1073%2Fpnas.0914540107},

doi = {10.1073/pnas.0914540107},

year  = {2010},

date = {2010-03-01},

journal = {Proceedings of the National Academy of Sciences},

volume = {107},

number = {11},

pages = {4961--4966},

publisher = {Proceedings of the National Academy of Sciences},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Karayiannis_2010,

title = {Modeling of crystal nucleation and growth in athermal polymers: Self-assembly of layered nano-morphologies},

author = {Nikos Ch. Karayiannis and Katerina Foteinopoulou and Cameron F. Abrams and Manuel Laso},

url = {https://doi.org/10.1039%2Fb923369e},

doi = {10.1039/b923369e},

year  = {2010},

date = {2010-01-01},

journal = {Soft Matter},

volume = {6},

number = {10},

pages = {2160},

publisher = {Royal Society of Chemistry (RSC)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Vashisth_2010b,

title = {Docking of insulin to a structurally equilibrated insulin receptor ectodomain},

author = {Harish Vashisth and Cameron F. Abrams},

url = {https://doi.org/10.1002%2Fprot.22670},

doi = {10.1002/prot.22670},

year  = {2010},

date = {2010-01-01},

journal = {Proteins: Structure, Function, and Bioinformatics},

pages = {NA--NA},

publisher = {Wiley},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mukherji_2009c,

title = {Anomalous ductility in thermoset/thermoplastic polymer alloys: An explanation based on overlap concentration and cavity growth},

author = {Debashish Mukherji and Cameron F. Abrams},

url = {https://doi.org/10.1209%2F0295-5075%2F88%2F56001},

doi = {10.1209/0295-5075/88/56001},

year  = {2009},

date = {2009-12-01},

journal = {EPL (Europhysics Letters)},

volume = {88},

number = {5},

pages = {56001},

publisher = {IOP Publishing},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mukherji_2009,

title = {Mechanical behavior of highly cross-linked polymer networks and its links to microscopic structure},

author = {Debashish Mukherji and Cameron F. Abrams},

url = {https://doi.org/10.1103%2Fphysreve.79.061802},

doi = {10.1103/physreve.79.061802},

year  = {2009},

date = {2009-06-01},

journal = {Physical Review E},

volume = {79},

number = {6},

publisher = {American Physical Society (APS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mukherji_2009b,

title = {Anomalous ductility in thermoset/thermoplastic polymer alloys},

author = {Debashish Mukherji and Cameron F. Abrams},

url = {https://doi.org/10.1039%2Fb818039c},

doi = {10.1039/b818039c},

year  = {2009},

date = {2009-01-01},

journal = {Physical Chemistry Chemical Physics},

volume = {11},

number = {12},

pages = {2113},

publisher = {Royal Society of Chemistry (RSC)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mukherji_2008,

title = {Microvoid formation and strain hardening in highly cross-linked polymer networks},

author = {Debashish Mukherji and Cameron F. Abrams},

url = {https://doi.org/10.1103%2Fphysreve.78.050801},

doi = {10.1103/physreve.78.050801},

year  = {2008},

date = {2008-11-01},

journal = {Physical Review E},

volume = {78},

number = {5},

pages = {050801(R)},

publisher = {American Physical Society (APS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Vashisth_2008,

title = {Ligand Escape Pathways and (Un)Binding Free Energy Calculations for the Hexameric Insulin-Phenol Complex},

author = {Harish Vashisth and Cameron F. Abrams},

url = {https://doi.org/10.1529%2Fbiophysj.108.139675},

doi = {10.1529/biophysj.108.139675},

year  = {2008},

date = {2008-11-01},

journal = {Biophysical Journal},

volume = {95},

number = {9},

pages = {4193--4204},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Sliozberg_2007,

title = {Spontaneous Conformational Changes in the E. coli GroEL Subunit from All-Atom Molecular Dynamics Simulations},

author = {Yelena Sliozberg and Cameron F. Abrams},

url = {https://doi.org/10.1529%2Fbiophysj.107.108043},

doi = {10.1529/biophysj.107.108043},

year  = {2007},

date = {2007-09-01},

journal = {Biophysical Journal},

volume = {93},

number = {6},

pages = {1906--1916},

publisher = {Elsevier BV},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jabbarzadeh_2007,

title = {Strategies to Enhance Capillary Formation Inside Biomaterials: A Computational Study},

author = {Ehsan Jabbarzadeh and Cameron F. Abrams},

url = {https://doi.org/10.1089%2Ften.2006.0057},

doi = {10.1089/ten.2006.0057},

year  = {2007},

date = {2007-08-01},

journal = {Tissue Engineering},

volume = {13},

number = {8},

pages = {2073--2086},

publisher = {Mary Ann Liebert Inc},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Richardson_2007,

title = {The effects of nanotube fillers on craze formation in simulated glassy polymers under tensile load},

author = {D. G. Richardson and C. F. Abrams},

url = {https://doi.org/10.1080%2F08927020601154637},

doi = {10.1080/08927020601154637},

year  = {2007},

date = {2007-04-01},

journal = {Molecular Simulation},

volume = {33},

number = {4-5},

pages = {421--427},

publisher = {Informa UK Limited},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jabbarzadeh_2007b,

title = {Simulations of Chemotaxis and Random Motility in 2D Random Porous Domains},

author = {Ehsan Jabbarzadeh and Cameron F. Abrams},

url = {https://doi.org/10.1007%2Fs11538-006-9153-1},

doi = {10.1007/s11538-006-9153-1},

year  = {2007},

date = {2007-01-01},

journal = {Bulletin of Mathematical Biology},

volume = {69},

number = {2},

pages = {747--764},

publisher = {Springer Science and Business Media LLC},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Abrams_2006,

title = {Diffusion/Reaction in Confined Polymer Chains},

author = {Cameron F. Abrams and Nam-Kyung Lee and A. Johner},

url = {https://doi.org/10.1021%2Fma060044d},

doi = {10.1021/ma060044d},

year  = {2006},

date = {2006-05-01},

journal = {Macromolecules},

volume = {39},

number = {10},

pages = {3655--3663},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Richardson_2006,

title = {Polymer Chain Winding in the Melt},

author = {David G. Richardson and Cameron F. Abrams},

url = {https://doi.org/10.1021%2Fma051985d},

doi = {10.1021/ma051985d},

year  = {2006},

date = {2006-03-01},

journal = {Macromolecules},

volume = {39},

number = {6},

pages = {2330--2339},

publisher = {American Chemical Society (ACS)},

keywords = {},

pubstate = {published},

tppubtype = {article}

}