Address

Contact Information

Email: jmrgardner@gmail.com

Jasmine Gardner

Ph.D. Student

Ph.D., 2019

“Lipid and protein contributions to viral proliferation as studied using MD simulations and advanced MD techniques”

Publications:

J. M. Gardner and C. F. Abrams, “Energetics of flap opening in HIV-1 protease: String method calculations,” The Journal of Physical Chemistry B, vol. 123, iss. 45, p. 9584–9591, 2019. [Bibtex] [doi]
@article{Gardner_2019,
doi = {10.1021/acs.jpcb.9b08348},
url = {https://doi.org/10.1021%2Facs.jpcb.9b08348},
year = 2019,
month = {oct},
publisher = {American Chemical Society ({ACS})},
volume = {123},
number = {45},
pages = {9584--9591},
author = {Jasmine M. Gardner and Cameron F. Abrams},
title = {Energetics of Flap Opening in {HIV}-1 Protease: {S}tring Method Calculations},
journal = {{The Journal of Physical Chemistry B}}
}

A. Bhaduri, J. Gardner, C. F. Abrams, and L. Graham-Brady, “Free energy calculation using space filled design and weighted reconstruction: A modified single sweep approach,” Molecular Simulation, vol. 46, iss. 3, p. 193–206, 2019. [Bibtex] [doi]
@article{Bhaduri_2019,
doi = {10.1080/08927022.2019.1688325},
url = {https://doi.org/10.1080%2F08927022.2019.1688325},
year = 2019,
month = {nov},
publisher = {Informa {UK} Limited},
volume = {46},
number = {3},
pages = {193--206},
author = {Anindya Bhaduri and Jasmine Gardner and Cameron F. Abrams and Lori Graham-Brady},
title = {Free energy calculation using space filled design and weighted reconstruction: {A} modified single sweep approach},
journal = {{Molecular Simulation}}
}

M. Lu, X. Ma, L. R. Castillo-Menendez, J. Gorman, N. Alsahafi, U. Ermel, D. S. Terry, M. Chambers, D. Peng, B. Zhang, T. Zhou, N. Reichard, K. Wang, J. R. Grover, B. P. Carman, M. R. Gardner, I. Nikić-Spiegel, A. Sugawara, J. Arthos, E. A. Lemke, A. B. Smith, M. Farzan, C. Abrams, J. B. Munro, A. B. McDermott, A. Finzi, P. D. Kwong, S. C. Blanchard, J. G. Sodroski, and W. Mothes, “Associating HIV-1 envelope glycoprotein structures with states on the~virus observed by smFRET,” Nature, vol. 568, iss. 7752, p. 415–419, 2019. [Bibtex] [doi]
@article{Lu_2019,
doi = {10.1038/s41586-019-1101-y},
url = {https://doi.org/10.1038%2Fs41586-019-1101-y},
year = 2019,
month = {apr},
publisher = {Springer Science and Business Media {LLC}},
volume = {568},
number = {7752},
pages = {415--419},
author = {Maolin Lu and Xiaochu Ma and Luis R. Castillo-Menendez and Jason Gorman and Nirmin Alsahafi and Utz Ermel and Daniel S. Terry and Michael Chambers and Dongjun Peng and Baoshan Zhang and Tongqing Zhou and Nick Reichard and Kevin Wang and Jonathan R. Grover and Brennan P. Carman and Matthew R. Gardner and Ivana Niki{\'{c}}-Spiegel and Akihiro Sugawara and James Arthos and Edward A. Lemke and Amos B. Smith and Michael Farzan and Cameron Abrams and James B. Munro and Adrian B. McDermott and Andr{\'{e}}s Finzi and Peter D. Kwong and Scott C. Blanchard and Joseph G. Sodroski and Walther Mothes},
title = {Associating {HIV}-1 envelope glycoprotein structures with states on the~virus observed by {smFRET}},
journal = {{Nature}}
}

J. M. Gardner and C. F. Abrams, “Lipid flip-flop vs. lateral diffusion in the relaxation of hemifusion diaphragms,” Biochimica et Biophysica Acta (BBA) – Biomembranes, vol. 1860, iss. 7, p. 1452–1459, 2018. [Bibtex] [doi]
@article{Gardner_2018,
doi = {10.1016/j.bbamem.2018.04.007},
url = {https://doi.org/10.1016%2Fj.bbamem.2018.04.007},
year = 2018,
month = {jul},
publisher = {Elsevier {BV}},
volume = {1860},
number = {7},
pages = {1452--1459},
author = {Jasmine M. Gardner and Cameron F. Abrams},
title = {Lipid flip-flop vs. lateral diffusion in the relaxation of hemifusion diaphragms},
journal = {{Biochimica et Biophysica Acta ({BBA}) - Biomembranes}}
}

J. M. Gardner and C. F. Abrams, “Rate of hemifusion diaphragm dissipation and ability to form three-junction bound HD determined by lipid composition,” The Journal of Chemical Physics, vol. 147, iss. 13, p. 134903, 2017. [Bibtex] [doi]
@article{Gardner_2017,
doi = {10.1063/1.4994320},
url = {https://doi.org/10.1063%2F1.4994320},
year = 2017,
month = {oct},
publisher = {{AIP} Publishing},
volume = {147},
number = {13},
pages = {134903},
author = {Jasmine M. Gardner and Cameron F. Abrams},
title = {Rate of hemifusion diaphragm dissipation and ability to form three-junction bound {HD} determined by lipid composition},
journal = {{The Journal of Chemical Physics}}
}

J. M. Gardner, M. Deserno, and C. F. Abrams, “Effect of intrinsic curvature and edge tension on the stability of binary mixed-membrane three-junctions,” The Journal of Chemical Physics, vol. 145, iss. 7, p. 74901, 2016. [Bibtex] [doi]
@article{Gardner_2016,
doi = {10.1063/1.4960433},
url = {https://doi.org/10.1063%2F1.4960433},
year = 2016,
month = {aug},
publisher = {{AIP} Publishing},
volume = {145},
number = {7},
pages = {074901},
author = {Jasmine M. Gardner and Markus Deserno and Cameron F. Abrams},
title = {Effect of intrinsic curvature and edge tension on the stability of binary mixed-membrane three-junctions},
journal = {{The Journal of Chemical Physics}}
}

Professional Experience

  1. 2019-
    Postdoctoral researcher
    University of Uppsala, Sweden